Plot AF — plot_af • sbt

Plot fit to age frequency (AF) observations.

Usage

plot_af(
  data,
  object,
  posterior = NULL,
  probs = c(0.025, 0.975),
  years = NULL,
  fishery = "Indonesian",
  iters = NULL,
  ...
)

data: a list containing the data that was passed to MakeADFun.
object: a list specifying the AD object created using MakeADFun.
posterior: an rstan objected created using the tmbstan function.
probs: a numeric vector of probabilities with values in [0,1] for plotting quantiles of the posterior distribution.
years: the years to plot.
fishery: the fishery to plot (Indonesian or Australian).
iters: The number of iterations to be extracted.
...: additional parameters passed on to facet_wrap.

a ggplot2 object.