Extend data and parameter lists for projection simulations.
Usage
prepare_proj(
data,
parameters,
map,
obj,
adfit = NULL,
mod_proj,
n_proj,
iters = 1000,
seed = 42,
type = "do_dynamics"
)Arguments
- data
A
listcontaining model data structure.- parameters
A
listcontaining model parameters.- map
A
listspecifying which parameters are fixed or mapped.- obj
A fitted TMB model object from initial fit.
- adfit
An MCMC posterior sample object, or NULL if not using MCMC.
- mod_proj
An
integerspecifying the number of terminal model years to overwrite with recruitment projections.- n_proj
An
integerspecifying the number of projection years to add.- iters
An
integerspecifying the number of samples from posterior distribution.- seed
An
integerrandom seed for reproducibility.- type
A
characterspecifying output type: "do_dynamics" outputs everything for do_dynamics function; "obj" outputs for creating obj for MP.
