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Set up the data input file

Source: R/get-data.R
get_data.Rd

Set up the data input file to be passed to MakeADFun. This function runs data cross validation tests and appends several inputs to the data list including model dimensions and processed inputs:

Usage

get_data(data_in)

Arguments

data_in

a list containing the data inputs.

Value

a list ready to be passed to MakeADFun.

Details

  • n_year: dervied from first_yr and last_yr

  • n_season: set to 2

  • n_length: not in use

  • n_age: derived from min_age and max_age

  • n_fishery: set to 6

  • age_a: sequence of modeled ages derived from min_age and max_age

  • length_mu_ysa: derived from the length_mean input

  • length_sd_a: derived from the length_sd input

  • dl_yal: derived from length_mu_ysa and length_sd_a

  • weight_fya: derived from length_mu_ysa and length_sd_a

  • catch_obs_ysf: derived from catch, catch_UA, scenarios_LL1, and scenarios_surf

  • sel_change_year_fy: derived from sel_change_sd_fy

This function produces the data input file to be passed to MakeADFun.