Plot selectivity — plot_selectivity • sbt

Plot selectivity by fishery, year, and age.

Usage

plot_selectivity(
  data,
  object,
  posterior = NULL,
  probs = c(0.025, 0.975),
  years = 2013:2022,
  fisheries = c("LL1", "LL2", "LL3", "LL4", "Indonesian", "Australian"),
  ...
)

Arguments

data: a list containing the data that was passed to MakeADFun.
object: a list specifying the AD object created using MakeADFun.
posterior: an rstan objected created using the tmbstan function.
probs: a numeric vector of probabilities with values in [0,1] for plotting quantiles of the posterior distribution.
years: the years to show on the plot.
fisheries: the fisheries to show on the plot.
...: options passed on to geom_density_ridges.

Value

a ggplot2 object.