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Plot selectivity

Source: R/plot-selectivity.R
plot_selectivity.Rd

Plot selectivity by fishery, year, and age.

Usage

plot_selectivity(
  data,
  object,
  posterior = NULL,
  probs = c(0.025, 0.975),
  years = 2013:2022,
  fisheries = c("LL1", "LL2", "LL3", "LL4", "Indonesian", "Australian", "CPUE"),
  ...
)

Arguments

data

a list containing the data that was passed to MakeADFun.

object

a list specifying the AD object created using MakeADFun.

posterior

an rstan objected created using the tmbstan function.

probs

a numeric vector of probabilities with values in [0, 1] for plotting quantiles of the posterior distribution.

years

the years to show on the plot.

fisheries

the fisheries to show on the plot.

...

options passed on to geom_density_ridges.

Value

a ggplot2 object.