Plot selectivity — plot_selectivity • sbt

Plot selectivity by fishery, year, and age.

Usage

plot_selectivity(
  data,
  object,
  posterior = NULL,
  probs = c(0.025, 0.975),
  years = 2013:2022,
  fisheries = c("LL1", "LL2", "LL3", "LL4", "Indonesian", "Australian", "CPUE"),
  ...
)

Arguments

data: A list containing the data that was passed to MakeADFun.
object: A list specifying the AD object created using MakeADFun.
posterior: An rstan object created using the tmbstan function. Default is NULL.
probs: A numeric vector of probabilities with values in [0, 1] for plotting quantiles of the posterior distribution.
years: A numeric vector specifying the years to display on the plot.
fisheries: A character vector specifying the fisheries to display on the plot.
...: Additional options passed on to geom_density_ridges.

Value

A ggplot2 object displaying selectivity patterns.