Check abundance outputs — check

Check model reports for non-positive or non-finite numbers-at-age and spawning biomass. The unused terminal season-2 slice of number_ysa is ignored.

Usage

check_abundance(
  data = NULL,
  object = NULL,
  report = NULL,
  eps = 0L,
  quiet = FALSE
)

Arguments

data: A list containing the data that was passed to MakeADFun. Optional, but used to label years and ages.
object: A list specifying the AD object created using MakeADFun. Not required if report is supplied.
report: Optional precomputed model report list.
eps: Numeric threshold. Values less than or equal to eps are flagged. Default is 0.
quiet: Logical. If FALSE, issue a warning when invalid values are found. Default is FALSE.

Value

A list with an ok flag, a summary table, and detailed issue tables.

Details

This is a lightweight plotting diagnostic. It does not check raw harvest, exact catch conditioning, mortality, or the continuation penalty and is not a substitute for diagnose_sbt_states() or check_mle().