The labrep1 data set is a list containing the lab.rep
output file from a base22sqrt model run.
Format
A list containing multiple fields including:
- scenario_number
Integer. The scenario number for this labrep file.
- n
Integer. Number of model years.
- years
Integer vector. The first and last model years (1931-2022).
- ObjF
Numeric. The objective function value.
- lnlike
Numeric vector. The log likelihood values by component.
- penal
Numeric vector. The prior and penalty values.
- Hhigh
Numeric. Harvest rate parameter for high exploitation period.
- H2003
Numeric. Harvest rate for 2003.
- H2004
Numeric. Harvest rate for 2004.
- sigma.cpue
Numeric. Standard deviation for CPUE observations.
- tag.var.factor
Numeric. Variance inflation factor for tagging data.
- gtOD.factor
Numeric. Overdispersion factor for gene tagging data.
- tau.aerial
Numeric. Precision parameter for aerial survey.
- tau.troll
Numeric. Precision parameter for troll index.
- sigma.r
Numeric. Recruitment standard deviation.
- rec_AC
Numeric. Recruitment autocorrelation.
- AC_penalty
Numeric. Autocorrelation penalty value.
- q_AC
Numeric. CPUE autocorrelation.
- res.stats
Numeric vector. Residual statistics.
- B0
Numeric. Unfished spawning biomass.
- R0
Numeric. Unfished recruitment.
- alpha
Numeric. Stock-recruit alpha parameter.
- beta
Numeric. Stock-recruit beta parameter.
- rho
Numeric. Correlation parameter.
- steep
Numeric. Steepness of the stock-recruit relationship.
- depletion
Numeric vector. Spawning biomass depletion by year.
- psi
Numeric. Selectivity parameter.
- lnq
Numeric. Log catchability coefficient.
- qhsp
Numeric. Catchability for half sibling pairs.
- qgt
Numeric. Catchability for gene tagging.
- M
Numeric vector. Natural mortality rate by age.
- omega
Numeric. CPUE process error parameter.
- TOTbio
Numeric vector. Total biomass by year.
- B10_plus
Numeric vector. Biomass of age 10+ fish by year.
- Sbio
Numeric vector. Spawning biomass by year.
- phi
Numeric. Spawning potential ratio parameter.
- phsp
Numeric. HSP-related parameter.
- Recruitment
Numeric vector. Recruitment by year.
- Rdev
Numeric vector. Recruitment deviations by year.
- Reps
Numeric vector. Recruitment epsilon values.
- ages
Integer vector. The first and last model ages (0 and 30).