The par1 data set is a list containing the .par
output file from a base22sqrt model run.
Format
A list containing parameter values including:
- ln_B0
Numeric. Log of unfished spawning biomass.
- lnq
Numeric. Log of CPUE catchability coefficient.
- lnqhsp
Numeric. Log of HSP catchability coefficient.
- deltalnq08
Numeric. Change in log catchability for 2008.
- steep
Numeric. Steepness of the stock-recruit relationship.
- sigma_r
Numeric. Recruitment standard deviation.
- sigma_cpue
Numeric. CPUE observation error standard deviation.
- m0
Numeric. Natural mortality rate at age 0.
- m4
Numeric. Natural mortality rate at age 4.
- m10
Numeric. Natural mortality rate at age 10.
- m30
Numeric. Natural mortality rate at age 30.
- cpue_omega
Numeric. CPUE process error parameter.
- psi
Numeric. Selectivity parameter.
- Reps
Numeric vector. Recruitment epsilon values.
- ln_bdiff
Numeric. Log of biomass difference parameter.
- ln_sel_aerial
Numeric. Log of aerial survey selectivity.
- tau_aerial
Numeric. Precision parameter for aerial survey.
- tau_troll
Numeric. Precision parameter for troll index.
- tag_H_factor
Numeric. Tag harvest rate inflation factor.
- par_sels_init_i
Numeric matrix. Initial selectivity by age for each fishery.
- par_sels_change_i
Numeric matrix. Changes in selectivity over time.
- par_log_hstar_i
Numeric vector. Log of harvest rate parameters by fishery.