Calculate Gene Tagging (GT) Likelihood (Version 1)

Calculate Gene Tagging (GT) Likelihood (Version 1)

Usage

get_GT_like_v1(gt_switch, gt_obs, number_ysa)

Arguments

gt_switch

An integer scalar, switch to turn on (>0) or off (0) the GT likelihood.

gt_obs

A numeric matrix with columns: release year, release age, (other columns), number released, number scanned, number recaptured.

number_ysa

A numeric array of dimensions \[n_year + 1, n_season, n_age\], numbers-at-age.

Value

A numeric vector of negative log-likelihood values for each GT observation (or zeros if switch is off).

Legacy status

These functions reproduce historical version-1 assessment code for audit and comparison. They are not the production SBT objective, do not implement the current data, mortality, harvest-wall, or biological-state contracts, and receive only compatibility maintenance. New analyses should use get_data(), sbt_model(), and the current component helpers.