Extract likelihood profile information from MCMC samples.
Usage
get_mcmc_profile(obj, mcmc, name)
Arguments
- obj
Object from MakeADFun that has been optimized.
- mcmc
MCMC fit object. MCMC samples from which to extract likelihood profiles.
- name
Character string. Name of a parameter to profile.
Value
A data frame with columns:
- par
Parameter values from MCMC samples
- total
Total negative log-likelihood
- tag, cpue, sexr, lf
Likelihood components from different data sources
- prior
Prior contribution to likelihood
