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Plot recruitment

Source: R/recruitment.R
plot_recruitment.Rd

Plot recruitment by year.

Usage

plot_recruitment(
  fit = NULL,
  object = NULL,
  posterior = NULL,
  probs = c(0.025, 0.975),
  data = NULL
)

Arguments

fit

An sbt_fit object. Its stored MCMC is used by default.

object

Legacy RTMB objective used only with a legacy data-list input.

posterior

Use NULL to plot the fit's required embedded posterior summary, or FALSE for point estimates only. External posterior objects are not accepted.

probs

Numeric vector of posterior probabilities in [0, 1].

data

Legacy named alias for a model data list; supply object as well.

Value

A ggplot2 object showing recruitment over time.

See also

Other diagnostic plots: plot_af(), plot_biomass_spawning(), plot_cpue(), plot_gt(), plot_hsps(), plot_lf(), plot_pops(), plot_selectivity(), plot_tags(), plot_tags_residuals()

Examples

fit <- sbt_example_fit()
#> Warning: Dependency versions differ: RTMBdist, TMB
#> Warning: Dependency versions differ: RTMBdist, TMB
plot_recruitment(fit, posterior = FALSE)